Vermont Wilderness Act of 2006 - Designates as wilderness areas and components of the National Wilderness Preservation System certain lands in Vermont to be known as the Glastenbury Wilderness, Joseph Battell Wilderness, Breadloaf Wilderness, Lye Brook Wilderness, Peru Peak Wilderness, and Big Branch Wilderness.
Designates specified federal land as the Moosalamoo National Recreation Area. Directs the Secretary of Agriculture, acting through the Chief of the Forest Service, to develop and submit to specified congressional committees a comprehensive management plan for the Area.